Publications

Compiled from my ORCID record. The machine-readable source for this list is data/publications.json (CSL-JSON); regenerate with scripts/update_publications.py.

2024

  • Power JF, Carere CR, Welford HE, Hudson DT, Lee KC, Moreau JW, Ettema TJG, Reysenbach AL, Lee CK, Colman DR, Boyd ES, Morgan XC, et al. (2024) A genus in the bacterial phylum Aquificota appears to be endemic to Aotearoa-New Zealand. Nature Communications 15. doi:10.1038/s41467-023-43960-2
  • Lee KC, Archer SDJ, Kansour MK, Al-Mailem DM (2024) Bioremediation of oily hypersaline soil via autochthonous bioaugmentation with halophilic bacteria and archaea. Science of The Total Environment 922: 171279. doi:10.1016/j.scitotenv.2024.171279
  • Kalisa E, Saini A, Lee K, Mastin J, Schuster JK, Harner T (2024) Capturing the Aerobiome: Application of Polyurethane Foam Disk Passive Samplers for Bioaerosol Monitoring. ACS ES&T Air 1: 414-425. doi:10.1021/acsestair.3c00107
  • Sarkisova F, Morse Z, Lee K, Bostanci N (2024) Oral Irrigation Devices: A Scoping Review. Clinical and Experimental Dental Research 10. doi:10.1002/cre2.912
  • Lawrence P, Jackson L, Padamsee M, Lee K, Lacap-Bugler D (2024) Screening of Agathis australis endophytes as biological control agents against kauri dieback pathogen Phytophthora agathidicida. Journal of Plant Pathology 107: 39-51. doi:10.1007/s42161-023-01569-w

2023

  • Archer SDJ, Lee KC, Caruso T, Alcami A, Araya JG, Cary SC, Cowan DA, Etchebehere C, Gantsetseg B, Gomez-Silva B, Hartery S, Hogg ID, et al. (2023) Contribution of soil bacteria to the atmosphere across biomes. Science of The Total Environment 871: 162137. doi:10.1016/j.scitotenv.2023.162137
  • Li S, Young T, Archer S, Lee K, Alfaro AC (2023) Gut microbiome resilience of green-lipped mussels, Perna canaliculus, to starvation. International Microbiology 27: 571-580. doi:10.1007/s10123-023-00397-3
  • Lim YZ, Poh YH, Lee KC, Pointing SB, Wainwright BJ, Tan EJ (2023) Influence of native and exotic plant diet on the gut microbiome of the Gray’s Malayan stick insect, Lonchodes brevipes. Frontiers in Microbiology 14. doi:10.3389/fmicb.2023.1199187
  • Warren-Rhodes K, Cabrol NA, Phillips M, Tebes-Cayo C, Kalaitzis F, Ayma D, Demergasso C, Chong-Diaz G, Lee K, Hinman N, Rhodes KL, Boyle LN, et al. (2023) Orbit-to-ground framework to decode and predict biosignature patterns in terrestrial analogues. Nature Astronomy 7: 406-422. doi:10.1038/s41550-022-01882-x
  • Lawrence P, Padamsee M, Lee K, Lacap-Bugler DC (2023) Soil microbial functional gene dataset associated with Agathis australis. Data in Brief 51: 109791. doi:10.1016/j.dib.2023.109791
  • Maki T, Hosaka K, Lee KC, Kawabata Y, Kajino M, Uto M, Kita K, Igarashi Y (2023) Vertical distribution of airborne microorganisms over forest environments: A potential source of ice-nucleating bioaerosols. Atmospheric Environment 302: 119726. doi:10.1016/j.atmosenv.2023.119726

2022

  • Pardesi B, Roberton AM, Lee KC, Angert ER, Rosendale DI, Boycheva S, White WL, Clements KD (2022) Distinct microbiota composition and fermentation products indicate functional compartmentalization in the hindgut of a marine herbivorous fish. Molecular Ecology 31: 2494-2509. doi:10.1111/mec.16394
  • Wornell K, Pardesi B, Lee K, Boycheva S, Roberton AM, White WL (2022) High‐throughput Method for Novel Medium Development for Culture of Anaerobic Gut Bacteria. Current Protocols 2. doi:10.1002/cpz1.463
  • Li S, Young T, Archer S, Lee K, Sharma S, Alfaro AC (2022) Mapping the Green-Lipped Mussel (Perna canaliculus) Microbiome: A Multi-Tissue Analysis of Bacterial and Fungal Diversity. Current Microbiology 79. doi:10.1007/s00284-021-02758-5
  • Azizan A, Alfaro AC, Jaramillo D, Venter L, Young T, Frost E, Lee K, Van Nguyen T, Kitundu E, Archer SDJ, Ericson JA, Foxwell J, et al. (2022) Pathogenicity and virulence of bacterial strains associated with summer mortality in marine mussels (Perna canaliculus). FEMS Microbiology Ecology 98. doi:10.1093/femsec/fiac140
  • Stevenson SJR, Lee KC, Handley KM, Angert ER, White WL, Clements KD (2022) Substrate degradation pathways, conserved functions and community composition of the hindgut microbiota in the herbivorous marine fish Kyphosus sydneyanus. Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology 272: 111283. doi:10.1016/j.cbpa.2022.111283

2021

  • Maki T, Lee KC, Pointing SB, Watanabe K, Aoki K, Archer SDJ, Lacap-Bugler DC, Ishikawa A (2021) Desert and anthropogenic mixing dust deposition influences microbial communities in surface waters of the western Pacific Ocean. Science of The Total Environment 791: 148026. doi:10.1016/j.scitotenv.2021.148026

2020

  • Mathieu C, Hermans SM, Lear G, Buckley TR, Lee KC, Buckley HL (2020) A Systematic Review of Sources of Variability and Uncertainty in eDNA Data for Environmental Monitoring. Frontiers in Ecology and Evolution 8. doi:10.3389/fevo.2020.00135

2019

  • Maki T, Lee KC, Kawai K, Onishi K, Hong CS, Kurosaki Y, Shinoda M, Kai K, Iwasaka Y, Archer SDJ, Lacap‐Bugler DC, Hasegawa H, et al. (2019) Aeolian Dispersal of Bacteria Associated With Desert Dust and Anthropogenic Particles Over Continental and Oceanic Surfaces. Journal of Geophysical Research: Atmospheres 124: 5579-5588. doi:10.1029/2018jd029597
  • Archer SDJ, Lee KC, Caruso T, King-Miaow K, Harvey M, Huang D, Wainwright BJ, Pointing SB (2019) Air mass source determines airborne microbial diversity at the ocean–atmosphere interface of the Great Barrier Reef marine ecosystem. The ISME Journal 14: 871-876. doi:10.1038/s41396-019-0555-0
  • Archer SDJ, Lee KC, Caruso T, Maki T, Lee CK, Cary SC, Cowan DA, Maestre FT, Pointing SB (2019) Airborne microbial transport limitation to isolated Antarctic soil habitats. Nature Microbiology 4: 925-932. doi:10.1038/s41564-019-0370-4
  • King-Miaow K, Lee K, Maki T, LaCap-Bugler D, Archer SDJ (2019) Airborne Microorganisms in Antarctica: Transport, Survival and Establishment. Springer Polar Sciences: 163-196. doi:10.1007/978-3-030-02786-5_8
  • Kalisa E, Archer S, Nagato E, Bizuru E, Lee K, Tang N, Pointing S, Hayakawa K, Lacap-Bugler D (2019) Chemical and Biological Components of Urban Aerosols in Africa: Current Status and Knowledge Gaps. International Journal of Environmental Research and Public Health 16: 941. doi:10.3390/ijerph16060941
  • (2019) Lipid biomarkers in high-altitude geysers with resemblance to Hesperian surfaces on Mars (El Tatio, Chile). Geophysical Research Abstracts.
  • Sanchez-Garcia L, Fernandez-Martinez MA, García-Villadangos M, Blanco Y, Cady SL, Hinman N, Bowden ME, Pointing SB, Lee KC, Warren-Rhodes K, Lacap-Bugler D, Cabrol NA, et al. (2019) Microbial Biomarker Transition in High-Altitude Sinter Mounds From El Tatio (Chile) Through Different Stages of Hydrothermal Activity. Frontiers in Microbiology 9. doi:10.3389/fmicb.2018.03350
  • Kalisa E, Nagato E, Bizuru E, Lee K, Tang N, Pointing S, Hayakawa K, Archer S, Lacap-Bugler D (2019) Pollution characteristics and risk assessment of ambient PM2.5-bound PAHs and NPAHs in typical Japanese and New Zealand cities and rural sites. Atmospheric Pollution Research 10: 1396-1403. doi:10.1016/j.apr.2019.03.009
  • Warren-Rhodes KA, Lee KC, Archer SDJ, Cabrol N, Ng-Boyle L, Wettergreen D, Zacny K, Pointing SB (2019) Subsurface Microbial Habitats in an Extreme Desert Mars-Analog Environment. Frontiers in Microbiology 10. doi:10.3389/fmicb.2019.00069

2018

  • Stott MB, Lee KC‐, Morgan XC, Carere CR (2018) C hthonomonadaceae. Bergey’s Manual of Systematics of Archaea and Bacteria: 1-1. doi:10.1002/9781118960608.fbm00299
  • Stott MB, Lee KC‐, Morgan XC, Carere CR (2018) C hthonomonadales. Bergey’s Manual of Systematics of Archaea and Bacteria: 1-1. doi:10.1002/9781118960608.obm00136
  • Stott MB, Lee KC, Morgan XC, Carere CR (2018) C hthonomonas. Bergey’s Manual of Systematics of Archaea and Bacteria: 1-6. doi:10.1002/9781118960608.gbm01476
  • Kalisa E, Nagato EG, Bizuru E, Lee KC, Tang N, Pointing SB, Hayakawa K, Archer SDJ, Lacap-Bugler DC (2018) Characterization and Risk Assessment of Atmospheric PM 2.5 and PM 10 Particulate-Bound PAHs and NPAHs in Rwanda, Central-East Africa. Environmental Science & Technology 52: 12179-12187. doi:10.1021/acs.est.8b03219
  • Maki T, Furumoto S, Asahi Y, Lee KC, Watanabe K, Aoki K, Murakami M, Tajiri T, Hasegawa H, Mashio A, Iwasaka Y (2018) Long-range-transported bioaerosols captured in snow cover on Mount Tateyama, Japan: impacts of Asian-dust events on airborne bacterial dynamics relating to ice-nucleation activities. Atmospheric Chemistry and Physics 18: 8155-8171. doi:10.5194/acp-18-8155-2018
  • Archer S, Lee K, Caruso T, Maki T, Lee C, Cowan D, Maestre F, Pointing S (2018) Microbial dispersal limitation to isolated soil habitats in the McMurdo Dry Valleys of Antarctica. doi:10.1101/493411
  • Lee KC, Caruso T, Archer SDJ, Gillman LN, Lau MCY, Cary SC, Lee CK, Pointing SB (2018) Stochastic and Deterministic Effects of a Moisture Gradient on Soil Microbial Communities in the McMurdo Dry Valleys of Antarctica. Frontiers in Microbiology 9. doi:10.3389/fmicb.2018.02619

2017

  • (2017) Distribution of bacterial communities in microbial mats ecosystems in a latitudinal gradient at both polar regions. SCAR Biology Symposium, Leuven, Belgium.
  • Lacap-Bugler DC, Lee KK, Archer S, Gillman LN, Lau MCY, Leuzinger S, Lee CK, Maki T, McKay CP, Perrott JK, de los Rios-Murillo A, Warren-Rhodes KA, et al. (2017) Global Diversity of Desert Hypolithic Cyanobacteria. Frontiers in Microbiology 8. doi:10.3389/fmicb.2017.00867
  • Maki T, Hara K, Iwata A, Lee KC, Kawai K, Kai K, Kobayashi F, Pointing SB, Archer S, Hasegawa H, Iwasaka Y (2017) Variations in airborne bacterial communities at high altitudes over the Noto Peninsula (Japan) in response to Asian dust events. Atmospheric Chemistry and Physics 17: 11877-11897. doi:10.5194/acp-17-11877-2017

2016

  • Maki T, Ishikawa A, Mastunaga T, Pointing SB, Saito Y, Kasai T, Watanabe K, Aoki K, Horiuchi A, Lee KC, Hasegawa H, Iwasaka Y (2016) Atmospheric aerosol deposition influences marine microbial communities in oligotrophic surface waters of the western Pacific Ocean. Deep Sea Research Part I: Oceanographic Research Papers 118: 37-45. doi:10.1016/j.dsr.2016.10.002
  • Archer SDJ, de los Ríos A, Lee KC, Niederberger TS, Cary SC, Coyne KJ, Douglas S, Lacap-Bugler DC, Pointing SB (2016) Endolithic microbial diversity in sandstone and granite from the McMurdo Dry Valleys, Antarctica. Polar Biology 40: 997-1006. doi:10.1007/s00300-016-2024-9
  • Lee KC, Archer SDJ, Boyle RH, Lacap-Bugler DC, Belnap J, Pointing SB (2016) Niche Filtering of Bacteria in Soil and Rock Habitats of the Colorado Plateau Desert, Utah, USA. Frontiers in Microbiology 7. doi:10.3389/fmicb.2016.01489
  • Lee KC, Stott MB, Dunfield PF, Huttenhower C, McDonald IR, Morgan XC (2016) The Chthonomonas calidirosea Genome Is Highly Conserved across Geographic Locations and Distinct Chemical and Microbial Environments in New Zealand’s Taupō Volcanic Zone. Applied and Environmental Microbiology 82: 3572-3581. doi:10.1128/aem.00139-16
  • Maki T, Kurosaki Y, Onishi K, Lee KC, Pointing SB, Jugder D, Yamanaka N, Hasegawa H, Shinoda M (2016) Variations in the structure of airborne bacterial communities in Tsogt-Ovoo of Gobi desert area during dust events. Air Quality, Atmosphere & Health 10: 249-260. doi:10.1007/s11869-016-0430-3

2015

  • Lee KCY, Morgan XC, Power JF, Dunfield PF, Huttenhower C, Stott MB (2015) Complete genome sequence of the thermophilic Acidobacteria, Pyrinomonas methylaliphatogenes type strain K22T. Standards in Genomic Sciences 10. doi:10.1186/s40793-015-0099-5

2014

  • Lee KCY, Morgan XC, Dunfield PF, Tamas I, McDonald IR, Stott MB (2014) Genomic analysis of Chthonomonas calidirosea, the first sequenced isolate of the phylum Armatimonadetes. The ISME Journal 8: 1522-1533. doi:10.1038/ismej.2013.251
  • Lee KCY, Dunfield PF, Stott MB (2014) The Phylum Armatimonadetes. The Prokaryotes: 447-458. doi:10.1007/978-3-642-38954-2_388

2013

  • Lee KCY, Herbold CW, Dunfield PF, Morgan XC, McDonald IR, Stott MB (2013) Phylogenetic Delineation of the Novel Phylum Armatimonadetes (Former Candidate Division OP10) and Definition of Two Novel Candidate Divisions. Applied and Environmental Microbiology 79: 2484-2487. doi:10.1128/aem.03333-12

2012

  • Dunfield PF, Tamas I, Lee KC, Morgan XC, McDonald IR, Stott MB (2012) Electing a candidate: a speculative history of the bacterial phylum OP10. Environmental Microbiology 14: 3069-3080. doi:10.1111/j.1462-2920.2012.02742.x

2011

  • Lee KCY, Dunfield PF, Morgan XC, Crowe MA, Houghton KM, Vyssotski M, Ryan JLJ, Lagutin K, McDonald IR, Stott MB (2011) Chthonomonas calidirosea gen. nov., sp. nov., an aerobic, pigmented, thermophilic micro-organism of a novel bacterial class, Chthonomonadetes classis nov., of the newly described phylum Armatimonadetes originally designated candidate division OP10. International Journal of Systematic and Evolutionary Microbiology 61: 2482-2490. doi:10.1099/ijs.0.027235-0
  • Vyssotski M, Lee KC‐, Lagutin K, Ryan J, Morgan XC, Stott MB (2011) Fatty Acids of Chthonomonas calidirosea, of a Novel Class Chthonomonadetes from a Recently Described Phylum Armatimonadetes. Lipids 46: 1155-1161. doi:10.1007/s11745-011-3597-2